LOADING RAISINS
RAISINS-POOLED AUGMENTED DESIGN (II) Module
Discover R A I S I N S (R & AI Solutions in INferential Statistics) - your ultimate tool for analyzing Pooled Augmented Randomized Block Designs across multiple locations! Effortlessly upload your multi-environment data and generate instant, publication-ready tables tailored for augmented designs. Evaluate check and test treatments with precision, explore location and genotype x environment interactions, and visualize results through advanced plots. Transform complex multi-location trial data into clear, actionable insights with ease!
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The module is a part of RAISINS Software ©
STATOBERRY LLP
POOLED AUGMENTED DESIGN II
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Developed by
Team RAISINS, STATOBERRY LLP
Author: Chief Statistician
© All rights reserved to STATOBERRY LLP
Welcome! 👋
Welcome to RAISINS POOLED AUGMENTED DESIGN II!
Would you like a quick guided tour of the app before you begin?
📍 Original Data Scale
These tables show arithmetic means computed from the original untransformed data. Use these values for biological classification (e.g., PDI disease reaction categories). Letter groupings are inherited from the pooled augmented analysis performed on the adjusted/transformed scale.
Run the analysis first to view raw mean values
Upload your data, select variables, and click 'Run Analysis' in the Analysis Results tab.
Select a trait to view its pairwise comparisons (every treatment pair) and Wricke's ecovalence stability table.
Pairwise Comparisons
Stability — Wricke's Ecovalence Wᵢ
You're currently viewing plots for single character. Click the settings icon ( ⚙ ) in the top-left corner of the plot to switch between single and multiple character views, or explore the extensive customization options to personalize your visualization experience.
Box Plot
Violin Plot
Mean Value Plot
Connected Line Plot
Bar Plot
Frequency Distribution Plot
Multi-trait Dot-Range Plot
Stability Plot
Boxplot - Pooled Augmented RBD
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Boxplot Settings
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In Treatment / TxL mode, faceted view stacks one Check | Test row per trait vertically.
Theme & Font
Aspect Ratio
Y-axis Expansion
Two-Panel Width (Treatment / TxL mode)
Active when Factor = Treatment or TreatmentxLocation. Controls left and right panel widths.
Leave Width fields blank (NA) to auto-size by group count. Tip: avoid setting both to 1 - use proportional values (e.g. 3 and 10) for natural spacing.
Two-panel width is disabled.
Panel widths are managed automatically when Fixed Aspect Ratio is enabled.
To set custom left/right panel widths, uncheck the 'Fixed Aspect Ratio' box above.X-axis Panel Labels
Override the default x-axis titles for each panel. Leave blank to use defaults.
Title Style
Axis Title Style
Choose a different colour palette for each panel.
Box Appearance
Outlier Styling
Letters must be pre-computed and stored as a 'group' column in smry_checks, smry_tests, smry_loc, or smry_trt_loc.
Additional Elements
Active when Factor = Treatment. Test treatments whose adj. mean exceeds the best check mean are highlighted on the right panel.
Superior Point
Text Positioning
Trait / Strip Label Style
Controls the trait name label shown above each two-panel row (Treatment / TxL mode) and facet strips (Location mode).
Axis Lines
Grid Lines
Plot Background
Panel Background
Violin Plot - Pooled Augmented RBD
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Violin Plot Settings
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In Treatment / TxL mode, faceted view stacks one Check | Test row per trait vertically.
Theme & Font
Aspect Ratio
Y-axis Expansion
Two-Panel Width (Treatment / TxL mode)
Active when Factor = Treatment or TreatmentxLocation. Controls left and right panel widths.
Leave blank (NA) to auto-size. Tip: use proportional values (e.g. 3 and 10).
Two-panel width is disabled.
Panel widths are managed automatically when Fixed Aspect Ratio is enabled.
To set custom left/right panel widths, uncheck the 'Fixed Aspect Ratio' box above.X-axis Panel Labels
Title Style
Axis Title Style
Choose a different palette for each panel.
Violin Appearance
Inner Boxplot
Outlier Styling
Letters must be pre-computed as 'group' column.
Additional Elements
Active when Factor = Treatment. Test treatments whose adj. mean exceeds the best check mean are highlighted.
Superior Point
Text Positioning
Trait / Strip Label Style
Controls the trait name label shown above each two-panel row (Treatment / TxL mode) and facet strips (Location mode).
Axis Lines
Grid Lines
Plot Background
Panel Background
Mean Value Plot - Pooled Augmented RBD
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Mean Value Plot Settings
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In Treatment / TxL mode, faceted view stacks one Check | Test row per trait vertically.
Theme & Font
Aspect Ratio
Y-axis Expansion
Two-Panel Width (Treatment / TxL mode)
Active when Factor = Treatment or TreatmentxLocation. Controls left and right panel widths.
Leave blank (NA) to auto-size. Tip: use proportional values (e.g. 3 and 10).
Two-panel width is disabled.
Panel widths are managed automatically when Fixed Aspect Ratio is enabled.
To set custom left/right panel widths, uncheck the 'Fixed Aspect Ratio' box above.X-axis Panel Labels
Title Style
Axis Title Style
Choose a different palette for each panel.
Point Style
Error Bar Style
Connecting Line
Adjusted Mean Overlay
Overlays model-adjusted means as a second point layer (Treatment & Location modes only).
Letters are placed above the upper error-bar tip with a dynamic pad.
Active when Factor = Treatment. A reference line marks the best check adjusted mean on the Test panel.
Reference Line (geom_hline)
Text Positioning
Trait / Strip Label Style
Controls the trait name label above each two-panel row (Treatment / TxL mode) and facet strips (Location mode).
Axis Lines
Grid Lines
Plot Background
Panel Background
Connected Line Plot - Pooled Augmented RBD
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Connected Line Plot Settings
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In Grouped mode all traits are overlaid, coloured and styled by trait. Grouped mode shows its own legend (not global).
In Treatment / TxL faceted mode, one Check | Test row is stacked per trait.
Theme & Font
Aspect Ratio
Y-axis Expansion
Two-Panel Width (Treatment / TxL mode)
Leave blank (NA) to auto-size by group count.
Two-panel width is disabled.
Panel widths are managed automatically when Fixed Aspect Ratio is enabled.
To set custom left/right panel widths, uncheck the 'Fixed Aspect Ratio' box above.X-axis Panel Labels
Title Style
Axis Title Style
Line Colours
Point Colours
Error Bar Colours
Choose a different palette for each panel.
Line Style
Point Style
Error Bar Style
Letters are placed above the upper error-bar tip with a dynamic pad.
Active when Factor = Treatment. A reference line marks the best check adjusted mean on the Test panel.
Reference Line (geom_hline)
Text Positioning
Trait / Strip Label Style
Controls the trait name label above each two-panel row and facet strips.
Axis Lines
Grid Lines
Plot Background
Panel Background
Bar Plot - Pooled Augmented RBD
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Bar Plot Settings
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In Single Plot mode all traits appear on the x-axis with treatments as dodge-coloured bars. A palette is recommended. Single mode uses a local legend (not global).
In Treatment / TxL faceted mode one Check | Test row is stacked per trait.
Theme & Font
Aspect Ratio
Y-axis Expansion
Two-Panel Width (Treatment / TxL mode)
Leave blank (NA) to auto-size by group count.
Two-panel width is disabled.
Panel widths are managed automatically when Fixed Aspect Ratio is enabled.
To set custom left/right panel widths, uncheck the 'Fixed Aspect Ratio' box above.X-axis Panel Labels
Title Style
Axis Title Style
Choose a different palette for each panel.
Bar Style
Error Bar Style
Letters are placed above the upper error-bar tip with a dynamic pad.
Active when Factor = Treatment. A reference line marks the best check adjusted mean on the Test panel.
Reference Line (geom_hline)
Text Positioning
Trait / Strip Label Style
Controls the trait name label above each two-panel row and facet strips.
Axis Lines
Grid Lines
Plot Background
Panel Background
Adjusted Mean Distribution - Pooled Augmented RBD
Factor guidance:
Use
Treatment
to compare entry performance and identify superior genotypes against
check cultivars. Use
Location
as an environment diagnostic to assess whether locations are
similar enough to justify pooling.
Treatment x Location is NOT offered: cell means are a mixture of treatment and environment effects and cannot be validly summarised in a single frequency distribution.
Treatment x Location is NOT offered: cell means are a mixture of treatment and environment effects and cannot be validly summarised in a single frequency distribution.
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Distribution Plot Settings
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Axis Text
All settings in this section apply only in Treatment mode.
Check vertical lines and the side errorbar panel show only in Treatment mode. Each check is shown as a vertical line on the histogram and as a point <c2><b1> SE in the side panel.
Check Colours
Check Side Panel (Errorbar)
Panel Layout
Multi-trait Dot-Range Plot — Pooled Augmented RBD
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Dot-Range Settings
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Leave 'Facet Columns' blank for automatic column count.
Check Treatments
Test Treatments
Superior Tests (adj. mean > best check)
Vertical line at the highest check adjusted mean per facet.
Plot Title Style
Axis Title Style
Grid Lines
Axis Lines
Plot Background
Panel Background
Stability Plot — Adjusted Means across Locations
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Stability Plot Settings
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Leave 'Facet Columns' blank for automatic column count.
Annotates each treatment with a computed stability statistic.
Vertical line at the highest check grand mean per facet.
Plot Title Style
Axis Title Style
Grid Lines
Axis Lines
Plot Background
Panel Background
Crunching genetic components... please wait, boss!
Pooled Augmented RBD - CSV Data File Creator
This tool generates a CSV file in the correct format for Pooled Augmented RBD analysis across multiple locations or seasons.
How to use:
1. Enter the number of Locations / Seasons - the same block
layout is repeated for each location.
2. Enter the number of Blocks per Location.
3. Enter how many Test treatments appear in each block.
Test treatments differ per block; check treatments appear in
every block at every location.
4. Enter the number of Check treatments.
5. Enter the number of response variables (y1, y2, ...).
6. Click Create.
In the generated table, C1, C2, ... are check treatments and T1, T2, ... are test treatments. L1, L2, ... are locations. You can enter data by clicking cells or paste directly from Excel using Ctrl+V.
After data entry, click Download CSV file and upload the downloaded file in the Pooled Augmented RBD Analysis tab.
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